public class PorUtils
extends java.lang.Object
| Constructor and Description |
|---|
PorUtils() |
| Modifier and Type | Method and Description |
|---|---|
static java.lang.String |
PORtoITL(Por POR)
Get a POR as ITL
|
static Parameter[] |
readParameters(org.w3c.dom.NodeList nList)
Read parameters from a xml node list
|
static Por |
readPorfromDocument(org.w3c.dom.Document doc)
Read POR from a XML document
|
static Por |
readPORfromFile(java.lang.String file)
read POR from a xml file
|
static SuperPor |
readPORGfromFile(java.lang.String fileName)
Read a SuperPor from a PORG (zip file containing individual PORs)
|
static SequenceProfile[] |
readProfiles(org.w3c.dom.NodeList nList)
Read profiles from a xml node list
|
static void |
savePor(Por POR)
Save POR into a xml file
|
static void |
writeITLtofile(java.lang.String file,
Por POR)
save POR as ITL file
|
static void |
writeORCDtoXMLfile(java.lang.String file,
Orcd orcd)
Write the ORCD into a XML file
|
static void |
writePORGtofile(java.lang.String file,
SuperPor por)
Write a SuperPor as a PORG (zip file containing individual PORs)
|
static void |
writePORtofile(java.lang.String file,
Por POR)
save POR into a xml file
|
static void |
zipIt(java.lang.String zipFile,
java.lang.String sourceFolder)
ZIP the contents of folder into a zip file
|
public static void writePORGtofile(java.lang.String file,
SuperPor por)
file - por - public static SuperPor readPORGfromFile(java.lang.String fileName) throws java.io.IOException
fileName - java.io.IOExceptionpublic static Por readPorfromDocument(org.w3c.dom.Document doc)
doc - public static Por readPORfromFile(java.lang.String file)
file - public static Parameter[] readParameters(org.w3c.dom.NodeList nList) throws java.io.IOException
nList - java.io.IOExceptionpublic static SequenceProfile[] readProfiles(org.w3c.dom.NodeList nList)
nList - public static void savePor(Por POR)
POR - public static void writePORtofile(java.lang.String file,
Por POR)
file - POR - public static void writeITLtofile(java.lang.String file,
Por POR)
file - POR - public static void writeORCDtoXMLfile(java.lang.String file,
Orcd orcd)
file - orcd - public static java.lang.String PORtoITL(Por POR)
POR - public static void zipIt(java.lang.String zipFile,
java.lang.String sourceFolder)
zipFile - sourceFolder -